Communications in Theoretical Physics ›› 2017, Vol. 68 ›› Issue (01): 131-136.

• Interdisciplinary Physics and Related Areas of Science and Technology • Previous Articles     Next Articles

Effect of Temperature on Topological States of Circular DNA

Yang-Tao Fan1, Xiu-Yan Li1, Yan-Hui Liu1, Hu Chen2   

  1. 1 College of Physics, Guizhou University, Guiyang 550025, China;
    2 Department of Physics, Xiamen University, Xiamen 361005, China
  • Received: 2017-01-06 Published: 2017-07-01
  • Contact: 刘艳辉,E-mail:ionazati@itp.ac.cn E-mail:ionazati@itp.ac.cn
  • Funding Information: 

    Supported by the National Natural Science Foundation of China under Grant Nos. 11047022, 11204045, and 11464004, Guizhou Provincial Tracking Key Program of Social Development (SY20123089, SZ20113069), the General Financial Grant from the China Postdoctoral Science Foundation (2014M562341), the Research Foundation for Young University Teachers from Guizhou University (201311), and College Innovation Talent Team of Guizhou Province (2014)32

Abstract: The different topological states of circular double-stranded DNA can be defined by their linking number.The equilibrium distribution of linking number can be obtained by circularizing a linear DNA into a circle by ligase.Based on the recent experimental results that the DNA bending rigidity and twist rigidity strongly depend on temperature,the reduced bending rigidity can be approximated by g=(3.19×10-19-T·4.14×10-22) erg·cm over the temperature interval (5~53)℃,and the temperature dependence of twist rigidity can be fitted by C (T)=(4588.89exp (-T/117.04)-251.33) nm.The temperature dependence of the linking number distribution of circular DNAs can be predicted by using Monte Carlo simulation.The variance of linking number distribution on temperature is in accordance with the previous experimental results.Compared with the temperature dependence of bending rigidity,the temperature dependence of twist rigidity causes a noticeable fluctuation in linking number distribution and mainly contribute towards the variance change of linking number distribution of circular DNA.The variance of the writhe number and twist number in the equation 〈(△ Lk)2〉=〈(△ Tw)2〉+〈(Wr)2〉 depends on the length of circular DNA.When the length of circular DNA is less than 230 nm,the variance of twist number 〈(△ Tw)2〉 is dominant over the variance of writhe number (〈(Wr)2〉),whereas for the condition that the length of the circular DNA is larger than 370 nm.

Key words: DNA, Monte Carlo simulations, mechanical properties

PACS numbers: 

  • 87.14.gk