Insights into the Discrepancy between Single Molecule Experiments * |
Qian Zhou,Min Zhang,Yang-Tao Fan,Yu-Kang Wang,Lin Bao,Guang-Ju Zhao,Hu Chen,Yan-Hui Liu |
Fig. 8 (Color online) Effects of excited energy on fork structure generation. Loop lengths of sensor in Figs. 8(a)-8(d) are 37 bp, 57 bp, 81 bp, and 101 bp and complemented by 30 bp, 48 bp, 69 bp, and 87 bp ssDNA, respectively. Simulations are carried out under the condition with kink structure in dsDNA, fork at the junction between ssDNA and dsDNA, and NN stacking energy $\Delta\xi=1.3k_{B}T$. The fork in every sensor is generated more frequently with increasing excited energy. |
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