Understanding sequence effect in DNA bending elasticity by molecular dynamic simulations

Xiao-Wei Qiang,Hai-Long Dong,Kai-Xin Xiong,Wenbing Zhang,Zhi-Jie Tan

Table 1. The DNA sequences used in the work.

Name Sequencesa Cell size (nm3)b Tmc AA-TT 5′-CGAAAAAAAAAAAAAAAAGC-3′ 12 × 12 × 10 87.2 °C GCTTTTTTTTTTTTTTTTCG AT-TA 5′-CGATATATATATATATATGC-3′ 12 × 12 × 10 79.9 °C GCTATATATATATATATACG GENE 5′-CGACTCTACGGCATCTGCGC-3′ 12 × 12 × 10 104.2 °C GCTGAGATGCCGTAGACGCG